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IID00297
UniprotP09429
ProteinHigh mobility group protein B1
GeneHMGB1
OrganismHomo sapiens
Sequence LLPS PhaSepDB
PhaSePro
LLPSDB
DrLLPS
Network xml rdf
Structure
Experiment
  :order   disorder   conflict   PDB cluster   ProS   Pfam Domain   SEG
215
 order/disorder by at least rule
     disorder by at least rule
     order by at least rule
 order/disorder by majority rule
Seq 1-84 Monomer :
 Evidence NMR 2rtu A Reference
       Region 2rtu A 1-84 order
       Region 2rtu A 1-4 high_rmsd
       Region 2rtu A 83-84 high_rmsd
Seq 1-166 Monomer :
 Evidence NMR 2yrq A Reference
       Region 2yrq A 1-166 order
Seq 2-84 Hetero dimer : IID00015Complex
 Evidence NMR 2ly4 A Reference
       Region 2ly4 A 2-84 order
       Region 2ly4 A 2-7 high_rmsd
       Region 2ly4 A 79-84 high_rmsd
Seqphosphorylation
    100-100 Phosphoserine
    35-35 Phosphoserine
Seqacetylation
    172-172 N6-acetyllysine
    128-128 N6-acetyllysine
    127-127 N6-acetyllysine
    90-90 N6-acetyllysine
    43-43 N6-acetyllysine
    28-28 N6-acetyllysine
    29-29 N6-acetyllysine
    30-30 N6-acetyllysine
    12-12 N6-acetyllysine
    8-8 N6-acetyllysine
    3-3 N6-acetyllysine
    7-7 N6-acetyllysine
    173-173 N6-acetyllysine
    180-180 N6-acetyllysine
    177-177 N6-acetyllysine
    183-183 N6-acetyllysine
    182-182 N6-acetyllysine
    185-185 N6-acetyllysine
    184-184 N6-acetyllysine
    141-141 N6-acetyllysine
 
Prediction
NeProc
Disorder 1-11,43-48,83-93,152-170
Order 12-42,49-82,94-151,171-215
ProS 4-11,43-48,83-93,152-165
AlphaFold
Disorder 1-4,83-90,166-215
Order 5-82,91-165
Pfam Hmmer
PF00505 6-79 1.6e-16
PF00505 95-163 1.9e-36
SEG 144-157 ,170-215
Function
Function in SwissProt
In the extracellular compartment (following either active secretion or passive release) involved in regulation of the inflammatory response. Fully reduced HGMB1 (which subsequently gets oxidized after release) in association with CXCL12 mediates the recruitment of inflammatory cells during the initial phase of tissue injury; the CXCL12:HMGB1 complex triggers CXCR4 homodimerization (PubMed:22370717). Induces the migration of monocyte-derived immature dendritic cells and seems to regulate adhesive and migratory functions of neutrophils implicating AGER/RAGE and ITGAM (By similarity). Can bind to various types of DNA and RNA including microbial unmethylated CpG-DNA to enhance the innate immune response to nucleic acids. Proposed to act in promiscuous DNA/RNA sensing which cooperates with subsequent discriminative sensing by specific pattern recognition receptors (By similarity). Promotes extracellular DNA-induced AIM2 inflammasome activation implicating AGER/RAGE (PubMed:24971542). Disulfide HMGB1 binds to transmembrane receptors, such as AGER/RAGE, TLR2, TLR4 and probably TREM1, thus activating their signal transduction pathways. Mediates the release of cytokines/chemokines such as TNF, IL-1, IL-6, IL-8, CCL2, CCL3, CCL4 and CXCL10 (PubMed:12765338, PubMed:18354232, PubMed:19264983, PubMed:20547845, PubMed:24474694). Promotes secretion of interferon-gamma by macrophage-stimulated natural killer (NK) cells in concert with other cytokines like IL-2 or IL-12 (PubMed:15607795). TLR4 is proposed to be the primary receptor promoting macrophage activation and signaling through TLR4 seems to implicate LY96/MD-2 (PubMed:20547845). In bacterial LPS- or LTA-mediated inflammatory responses binds to the endotoxins and transfers them to CD14 for signaling to the respective TLR4:LY96 and TLR2 complexes (PubMed:18354232, PubMed:21660935, PubMed:25660311). Contributes to tumor proliferation by association with ACER/RAGE (By similarity). Can bind to IL1-beta and signals through the IL1R1:IL1RAP receptor complex (PubMed:18250463). Binding to class A CpG activates cytokine production in plasmacytoid dendritic cells implicating TLR9, MYD88 and AGER/RAGE and can activate autoreactive B cells. Via HMGB1-containing chromatin immune complexes may also promote B cell responses to endogenous TLR9 ligands through a B-cell receptor (BCR)-dependent and ACER/RAGE-independent mechanism (By similarity). Inhibits phagocytosis of apoptotic cells by macrophages; the function is dependent on poly-ADP-ribosylation and involves binding to phosphatidylserine on the cell surface of apoptotic cells (By similarity). In adaptive immunity may be involved in enhancing immunity through activation of effector T cells and suppression of regulatory T (TReg) cells (PubMed:15944249, PubMed:22473704). In contrast, without implicating effector or regulatory T-cells, required for tumor infiltration and activation of T-cells expressing the lymphotoxin LTA:LTB heterotrimer thus promoting tumor malignant progression (By similarity). Also reported to limit proliferation of T-cells (By similarity). Released HMGB1:nucleosome complexes formed during apoptosis can signal through TLR2 to induce cytokine production (PubMed:19064698). Involved in induction of immunological tolerance by apoptotic cells; its pro-inflammatory activities when released by apoptotic cells are neutralized by reactive oxygen species (ROS)-dependent oxidation specifically on Cys-106 (PubMed:18631454). During macrophage activation by activated lymphocyte-derived self apoptotic DNA (ALD-DNA) promotes recruitment of ALD-DNA to endosomes.
Biological Process
See also
Diagram with PDB data
TP53/HMGB1HMGB1-facilitated p53 DNA binding occurs via HMG-box/p53 transactivation domain interaction and is regulated by the acidic tail