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IID00761
UniprotO75417
ProteinDNA polymerase theta
GenePOLQ
OrganismHomo sapiens
Sequence LLPS PhaSepDB
PhaSePro
LLPSDB
DrLLPS
xml rdf
Structure
Experiment
  :order   disorder   conflict   PDB cluster   ProS   Pfam Domain   SEG
2590
 order/disorder by at least rule
     disorder by at least rule
     order by at least rule
 order/disorder by majority rule
Seq 1-894 Monomer :
 Evidence X-RAY 5a9j A Reference
       Region 5a9j A 1-34 disorder
       Region 5a9j A 35-246 order
       Region 5a9j A 247-255 disorder
       Region 5a9j A 256-367 order
       Region 5a9j A 368-376 disorder
       Region 5a9j A 377-564 order
       Region 5a9j A 565-574 disorder
       Region 5a9j A 575-599 order
       Region 5a9j A 600-604 disorder
       Region 5a9j A 605-837 order
       Region 5a9j A 838-857 disorder
       Region 5a9j A 858-892 order
       Region 5a9j A 893-894 disorder
 Evidence X-RAY 5a9j B Reference
       Region 5a9j B 1-38 disorder
       Region 5a9j B 39-55 order
       Region 5a9j B 56-56 disorder
       Region 5a9j B 57-246 order
       Region 5a9j B 247-255 disorder
       Region 5a9j B 256-367 order
       Region 5a9j B 368-372 disorder
       Region 5a9j B 373-563 order
       Region 5a9j B 564-575 disorder
       Region 5a9j B 576-599 order
       Region 5a9j B 600-606 disorder
       Region 5a9j B 607-837 order
       Region 5a9j B 838-857 disorder
       Region 5a9j B 858-893 order
       Region 5a9j B 894-894 disorder
 Evidence X-RAY 5a9j C Reference
       Region 5a9j C 1-34 disorder
       Region 5a9j C 35-43 order
       Region 5a9j C 44-66 disorder
       Region 5a9j C 67-246 order
       Region 5a9j C 247-255 disorder
       Region 5a9j C 256-369 order
       Region 5a9j C 370-376 disorder
       Region 5a9j C 377-564 order
       Region 5a9j C 565-576 disorder
       Region 5a9j C 577-599 order
       Region 5a9j C 600-606 disorder
       Region 5a9j C 607-838 order
       Region 5a9j C 839-856 disorder
       Region 5a9j C 857-890 order
       Region 5a9j C 891-894 disorder
 Evidence X-RAY 5a9j D Reference
       Region 5a9j D 1-38 disorder
       Region 5a9j D 39-44 order
       Region 5a9j D 45-66 disorder
       Region 5a9j D 67-246 order
       Region 5a9j D 247-255 disorder
       Region 5a9j D 256-367 order
       Region 5a9j D 368-376 disorder
       Region 5a9j D 377-563 order
       Region 5a9j D 564-575 disorder
       Region 5a9j D 576-598 order
       Region 5a9j D 599-605 disorder
       Region 5a9j D 606-835 order
       Region 5a9j D 836-859 disorder
       Region 5a9j D 860-893 order
       Region 5a9j D 894-894 disorder
Seq 67-894 Homo tetramer :
 Evidence X-RAY 5a9f A Reference
       Region 5a9f A 67-245 order
       Region 5a9f A 246-255 disorder
       Region 5a9f A 256-368 order
       Region 5a9f A 369-374 disorder
       Region 5a9f A 375-521 order
       Region 5a9f A 522-523 disorder
       Region 5a9f A 524-563 order
       Region 5a9f A 564-579 disorder
       Region 5a9f A 580-599 order
       Region 5a9f A 600-604 disorder
       Region 5a9f A 605-844 order
       Region 5a9f A 845-850 disorder
       Region 5a9f A 851-891 order
       Region 5a9f A 892-894 disorder
 Evidence X-RAY 5aga A Reference
       Region 5aga A 67-250 order
       Region 5aga A 251-255 disorder
       Region 5aga A 256-368 order
       Region 5aga A 369-374 disorder
       Region 5aga A 375-521 order
       Region 5aga A 522-523 disorder
       Region 5aga A 524-563 order
       Region 5aga A 564-579 disorder
       Region 5aga A 580-599 order
       Region 5aga A 600-604 disorder
       Region 5aga A 605-844 order
       Region 5aga A 845-850 disorder
       Region 5aga A 851-891 order
       Region 5aga A 892-894 disorder
Seq 1792-2590 Monomer :
 Evidence X-RAY 4x0p A Reference
       Region 4x0p A 1792-1823 disorder
       Region 4x0p A 1824-1860 order
       Region 4x0p A 1861-1895 disorder
       Region 4x0p A 1896-1917 order
       Region 4x0p A 1918-1934 disorder
       Region 4x0p A 1935-2145 order
       Region 4x0p A 2146-2175 disorder
       Region 4x0p A 2176-2260 order
       Region 4x0p A 2261-2306 disorder
       Region 4x0p A 2307-2512 order
       Region 4x0p A 2513-2526 disorder
       Region 4x0p A 2527-2590 order
 Evidence X-RAY 4x0p B Reference
       Region 4x0p B 1792-1823 disorder
       Region 4x0p B 1824-1860 order
       Region 4x0p B 1861-1895 disorder
       Region 4x0p B 1896-1917 order
       Region 4x0p B 1918-1934 disorder
       Region 4x0p B 1935-2145 order
       Region 4x0p B 2146-2175 disorder
       Region 4x0p B 2176-2260 order
       Region 4x0p B 2261-2306 disorder
       Region 4x0p B 2307-2512 order
       Region 4x0p B 2513-2526 disorder
       Region 4x0p B 2527-2590 order
 Evidence X-RAY 4x0p C Reference
       Region 4x0p C 1792-1823 disorder
       Region 4x0p C 1824-1860 order
       Region 4x0p C 1861-1895 disorder
       Region 4x0p C 1896-1917 order
       Region 4x0p C 1918-1934 disorder
       Region 4x0p C 1935-2145 order
       Region 4x0p C 2146-2175 disorder
       Region 4x0p C 2176-2260 order
       Region 4x0p C 2261-2306 disorder
       Region 4x0p C 2307-2512 order
       Region 4x0p C 2513-2526 disorder
       Region 4x0p C 2527-2590 order
 Evidence X-RAY 4x0p D Reference
       Region 4x0p D 1792-1823 disorder
       Region 4x0p D 1824-1860 order
       Region 4x0p D 1861-1895 disorder
       Region 4x0p D 1896-1917 order
       Region 4x0p D 1918-1934 disorder
       Region 4x0p D 1935-2145 order
       Region 4x0p D 2146-2175 disorder
       Region 4x0p D 2176-2260 order
       Region 4x0p D 2261-2306 disorder
       Region 4x0p D 2307-2512 order
       Region 4x0p D 2513-2526 disorder
       Region 4x0p D 2527-2590 order
 Evidence X-RAY 4x0q A Reference
       Region 4x0q A 1819-1823 disorder
       Region 4x0q A 1824-1860 order
       Region 4x0q A 1861-1895 disorder
       Region 4x0q A 1896-1917 order
       Region 4x0q A 1918-1934 disorder
       Region 4x0q A 1935-2145 order
       Region 4x0q A 2146-2175 disorder
       Region 4x0q A 2176-2260 order
       Region 4x0q A 2261-2306 disorder
       Region 4x0q A 2307-2512 order
       Region 4x0q A 2513-2526 disorder
       Region 4x0q A 2527-2590 order
 Evidence X-RAY 4x0q B Reference
       Region 4x0q B 1819-1823 disorder
       Region 4x0q B 1824-1860 order
       Region 4x0q B 1861-1895 disorder
       Region 4x0q B 1896-1917 order
       Region 4x0q B 1918-1934 disorder
       Region 4x0q B 1935-2145 order
       Region 4x0q B 2146-2175 disorder
       Region 4x0q B 2176-2260 order
       Region 4x0q B 2261-2306 disorder
       Region 4x0q B 2307-2512 order
       Region 4x0q B 2513-2526 disorder
       Region 4x0q B 2527-2590 order
Seq 1818-1867,1889-1920,1934-2148,2173-2263,2304-2515,2524-2590 Homo dimer :
 Evidence X-RAY 8e23 D Reference
       Region 8e23 D 1818-1820 disorder
       Region 8e23 D 1821-1860 order
       Region 8e23 D 1861-1865 disorder
       Region 8e23 D 1866-1867 order
       Region 8e23 D 1889-1920 order
       Region 8e23 D 1934-1955 order
       Region 8e23 D 1956-1957 disorder
       Region 8e23 D 1958-2024 order
       Region 8e23 D 2025-2028 disorder
       Region 8e23 D 2029-2093 order
       Region 8e23 D 2094-2097 disorder
       Region 8e23 D 2098-2121 order
       Region 8e23 D 2122-2122 disorder
       Region 8e23 D 2123-2145 order
       Region 8e23 D 2146-2148 disorder
       Region 8e23 D 2173-2176 disorder
       Region 8e23 D 2177-2224 order
       Region 8e23 D 2225-2225 disorder
       Region 8e23 D 2226-2258 order
       Region 8e23 D 2259-2263 disorder
       Region 8e23 D 2304-2311 disorder
       Region 8e23 D 2312-2318 order
       Region 8e23 D 2319-2321 disorder
       Region 8e23 D 2322-2362 order
       Region 8e23 D 2363-2364 disorder
       Region 8e23 D 2365-2494 order
       Region 8e23 D 2495-2497 disorder
       Region 8e23 D 2498-2507 order
       Region 8e23 D 2508-2515 disorder
       Region 8e23 D 2524-2526 disorder
       Region 8e23 D 2527-2530 order
       Region 8e23 D 2531-2533 disorder
       Region 8e23 D 2534-2553 order
       Region 8e23 D 2554-2555 disorder
       Region 8e23 D 2556-2590 order
 Evidence X-RAY 8e23 A Reference
       Region 8e23 A 1818-1823 disorder
       Region 8e23 A 1824-1867 order
       Region 8e23 A 1889-1920 order
       Region 8e23 A 1934-1955 order
       Region 8e23 A 1956-1957 disorder
       Region 8e23 A 1958-2148 order
       Region 8e23 A 2173-2175 disorder
       Region 8e23 A 2176-2260 order
       Region 8e23 A 2261-2263 disorder
       Region 8e23 A 2304-2309 disorder
       Region 8e23 A 2310-2508 order
       Region 8e23 A 2509-2515 disorder
       Region 8e23 A 2524-2526 disorder
       Region 8e23 A 2527-2590 order
 Evidence X-RAY 8e24 D Reference
       Region 8e24 D 1818-1820 disorder
       Region 8e24 D 1821-1867 order
       Region 8e24 D 1889-1920 order
       Region 8e24 D 1934-2028 order
       Region 8e24 D 2029-2029 disorder
       Region 8e24 D 2030-2146 order
       Region 8e24 D 2147-2148 disorder
       Region 8e24 D 2173-2174 disorder
       Region 8e24 D 2175-2263 order
       Region 8e24 D 2304-2508 order
       Region 8e24 D 2509-2515 disorder
       Region 8e24 D 2524-2526 disorder
       Region 8e24 D 2527-2589 order
       Region 8e24 D 2590-2590 disorder
 Evidence X-RAY 8e24 A Reference
       Region 8e24 A 1818-1822 disorder
       Region 8e24 A 1823-1867 order
       Region 8e24 A 1889-1920 order
       Region 8e24 A 1934-2146 order
       Region 8e24 A 2147-2148 disorder
       Region 8e24 A 2173-2178 disorder
       Region 8e24 A 2179-2189 order
       Region 8e24 A 2190-2190 disorder
       Region 8e24 A 2191-2263 order
       Region 8e24 A 2304-2509 order
       Region 8e24 A 2510-2515 disorder
       Region 8e24 A 2524-2525 disorder
       Region 8e24 A 2526-2589 order
       Region 8e24 A 2590-2590 disorder
Seq 1819-1860,1896-1917,1935-2145,2176-2260,2265-2272,2277-2299,2301-2512,2527-2590 Hetero hexamer :
 Evidence X-RAY 6xbu A Reference
       Region 6xbu A 1819-1822 disorder
       Region 6xbu A 1823-1860 order
       Region 6xbu A 1896-1917 order
       Region 6xbu A 1935-2034 order
       Region 6xbu A 2035-2037 disorder
       Region 6xbu A 2038-2116 order
       Region 6xbu A 2117-2125 disorder
       Region 6xbu A 2126-2139 order
       Region 6xbu A 2140-2145 disorder
       Region 6xbu A 2176-2177 disorder
       Region 6xbu A 2178-2260 order
       Region 6xbu A 2265-2272 order
       Region 6xbu A 2277-2299 order
       Region 6xbu A 2301-2302 order
       Region 6xbu A 2303-2306 disorder
       Region 6xbu A 2307-2512 order
       Region 6xbu A 2527-2587 order
       Region 6xbu A 2588-2590 disorder
Seqphosphorylation
    1755-1755 Phosphothreonine; by PLK1
    1635-1635 Phosphoserine; by PLK1
    1628-1628 Phosphoserine; by PLK1
    1563-1563 Phosphoserine; by PLK1
    1555-1555 Phosphoserine; by PLK1
    1493-1493 Phosphoserine; by PLK1
    1488-1488 Phosphoserine; by PLK1
    1486-1486 Phosphoserine; by PLK1
    1482-1482 Phosphoserine; by PLK1
    1289-1289 Phosphoserine; by PLK1
Seqacetylation
    990-990 N6-acetyllysine
 
Prediction
NeProc
Disorder 1-65,244-250,904-1306,1312-1324,1337-1566,1578-1821,2151-2174,2272-2305,2504-2525
Order 66-243,251-903,1307-1311,1325-1336,1567-1577,1822-2150,2175-2266,2306-2498,2526-2590
ProS 1-9,55-58,940-963,968-988,994-1003,1012-1021,1026-1032,1037-1067,1073-1081,1086-1089,1097-1267,1274-1306,1312-1324,1337-1349,1356-1410,1415-1420,1426-1452,1469-1500,1521-1566,1578-1602,1625-1656,1667-1679,1685-1716,1724-1736,1781-1785,1801-1811,2156-2171,2272-2276,2282-2294,2521-2525
AlphaFold
Disorder 1-67,176-179,246-257,367-382,449-449,521-526,564-580,600-606,658-658,700-704,837-857,865-867,895-1824,1859-1888,1893-1897,1920-1934,1955-1958,2022-2030,2036-2039,2144-2178,2182-2182,2246-2246,2260-2309,2355-2356,2391-2392,2401-2401,2496-2497,2510-2528,2590-2590
Order 68-175,180-245,258-366,383-448,450-520,527-563,581-599,607-657,659-699,705-836,858-864,868-894,1825-1858,1889-1892,1898-1919,1935-1954,1959-2021,2031-2035,2040-2143,2179-2181,2183-2245,2247-2259,2310-2354,2357-2390,2393-2400,2402-2495,2498-2509,2529-2589
Pfam Hmmer
PF00270 95-274 3.2e-19
PF00271 406-485 1.9e-14
PF00476 2094-2585 3.6e-52
SEG 5-30 ,845-855 ,904-917 ,1294-1306 ,1486-1497 ,1599-1613 ,1819-1826 ,2545-2558 ,2566-2577
Function
Function in SwissProt
Low-fidelity DNA polymerase with a helicase activity that promotes microhomology-mediated end-joining (MMEJ), an alternative non-homologous end-joining (NHEJ) machinery required to repair double-strand breaks in DNA during mitosis (PubMed:14576298, PubMed:18503084, PubMed:24648516, PubMed:25642963, PubMed:25643323, PubMed:27311885, PubMed:27591252, PubMed:30655289, PubMed:31562312, PubMed:32873648, PubMed:34179826, PubMed:34140467, PubMed:25775267, PubMed:26636256, PubMed:36455556, PubMed:37674080, PubMed:37440612). MMEJ is an error-prone repair pathway that produces deletions of sequences from the strand being repaired and promotes genomic rearrangements, such as telomere fusions, some of them leading to cellular transformation (PubMed:25642963, PubMed:25643323, PubMed:27311885, PubMed:27591252, PubMed:31562312, PubMed:32873648, PubMed:25775267). MMEJ is required during mitosis to repair persistent double-strand breaks that originate in S-phase (PubMed:37674080, PubMed:37440612). Although error-prone, MMEJ protects against chromosomal instability and tumorigenesis (By similarity). The polymerase acts by binding directly the 2 ends of resected double-strand breaks, allowing microhomologous sequences in the overhangs to form base pairs (PubMed:25643323, PubMed:27311885, PubMed:27591252, PubMed:25775267). It then extends each strand from the base-paired region using the opposing overhang as a template (PubMed:25643323, PubMed:27311885, PubMed:27591252, PubMed:25775267). Requires partially resected DNA containing 2 to 6 base pairs of microhomology to perform MMEJ (PubMed:25643323, PubMed:27311885, PubMed:27591252, PubMed:25775267). The polymerase lacks proofreading activity and is highly promiscuous: unlike most polymerases, promotes extension of ssDNA and partial ssDNA (pssDNA) substrates (PubMed:18503084, PubMed:21050863, PubMed:22135286). When the ends of a break do not contain terminal microhomology must identify embedded complementary sequences through a scanning step (PubMed:32234782). Also shows endonuclease activity, which is required to trim the 3' ends before synthesis can occur, thereby preventing non-paired tails (PubMed:33577776). Also acts as a DNA helicase, promoting dissociation of the replication protein A complex (RPA/RP-A), composed of RPA1, RPA2 and RPA3, from resected double-strand breaks to allow their annealing and subsequent joining by MMEJ (PubMed:36455556). Removal of RPA/RP-A complex proteins prevents RAD51 accumulation at resected ends, thereby inhibiting homology-recombination repair (HR) pathway (PubMed:25642963, PubMed:28695890). Also shows RNA-directed DNA polymerase activity to mediate DNA repair in vitro; however this activity needs additional evidence in vivo (PubMed:34117057). May also have lyase activity (PubMed:19188258). Involved in somatic hypermutation of immunoglobulin genes, a process that requires the activity of DNA polymerases to ultimately introduce mutations at both A/T and C/G base pairs (By similarity). POLQ-mediated end joining activity is involved in random integration of exogenous DNA hampers (PubMed:28695890).