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IID00812
UniprotP54727
ProteinUV excision repair protein RAD23 homolog B
GeneRAD23B
OrganismHomo sapiens
Sequence LLPS PhaSepDB
PhaSePro
LLPSDB
DrLLPS
Network xml rdf
Structure
Experiment
  :order   disorder   conflict   PDB cluster   ProS   Pfam Domain   SEG
409
 order/disorder by at least rule
     disorder by at least rule
     order by at least rule
 order/disorder by majority rule
Seq 1-82 Monomer :
 Evidence NMR 1p1a A Reference
       Region 1p1a A 1-82 order
       Region 1p1a A 77-82 high_rmsd
Seq 1-87 Hetero dimer : P55036
 Evidence NMR 1uel A Reference
       Region 1uel A 1-87 order
Seq 275-342 Monomer :
 Evidence NMR 1pve A Reference
       Region 1pve A 275-342 order
       Region 1pve A 334-342 high_rmsd
Seqphosphorylation
    202-202 Phosphotyrosine
    199-199 Phosphoserine
    186-186 Phosphothreonine
    174-174 Phosphoserine
    164-164 Phosphothreonine
    160-160 Phosphoserine
    155-155 Phosphothreonine
 
Prediction
NeProc
Disorder 75-189,228-274,333-356,405-409
Order 1-74,190-227,275-332,357-404
ProS 405-409
AlphaFold
Disorder 76-186,230-275,331-361,405-409
Order 1-75,187-229,276-330,362-404
Pfam Hmmer
PF00240 6-78 1.2e-26
PF00627 189-228 3.5e-13
PF00627 365-404 1.8e-08
SEG 81-159 ,252-271 ,280-296 ,333-355
Function
Function in SwissProt
The XPC complex is proposed to represent the first factor bound at the sites of DNA damage and together with other core recognition factors, XPA, RPA and the TFIIH complex, is part of the pre-incision (or initial recognition) complex. The XPC complex recognizes a wide spectrum of damaged DNA characterized by distortions of the DNA helix such as single-stranded loops, mismatched bubbles or single-stranded overhangs. The orientation of XPC complex binding appears to be crucial for inducing a productive NER. XPC complex is proposed to recognize and to interact with unpaired bases on the undamaged DNA strand which is followed by recruitment of the TFIIH complex and subsequent scanning for lesions in the opposite strand in a 5'-to-3' direction by the NER machinery. Cyclobutane pyrimidine dimers (CPDs) which are formed upon UV-induced DNA damage esacpe detection by the XPC complex due to a low degree of structural perurbation. Instead they are detected by the UV-DDB complex which in turn recruits and cooperates with the XPC complex in the respective DNA repair. In vitro, the XPC:RAD23B dimer is sufficient to initiate NER; it preferentially binds to cisplatin and UV-damaged double-stranded DNA and also binds to a variety of chemically and structurally diverse DNA adducts. XPC:RAD23B contacts DNA both 5' and 3' of a cisplatin lesion with a preference for the 5' side. XPC:RAD23B induces a bend in DNA upon binding. XPC:RAD23B stimulates the activity of DNA glycosylases TDG and SMUG1.
Biological Process
See also
Diagram with PDB data
XPA/ERCC1Solution structure of a ERCC1-XPA heterodimer
XPC/CETN2Solution structure of the C-terminal domain (T94-Y172) of the human centrin 2 in complex with a 17 residues peptide (P1-XPC) from xeroderma pigmentosum group C protein
XPC/GTF2H1Solution structure of the complex between XPC acidic domain and TFIIH p62 PH domain