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IID00903
UniprotQ9H9Q4
ProteinNon-homologous end-joining factor 1
GeneNHEJ1
OrganismHomo sapiens
Sequence LLPS PhaSepDB
PhaSePro
LLPSDB
DrLLPS
Network xml rdf
Structure
Experiment
  :order   disorder   conflict   PDB cluster   ProS   Pfam Domain   SEG
299
 order/disorder by at least rule
     disorder by at least rule
     order by at least rule
 order/disorder by majority rule
Seq 1-224
 Evidence X-RAY 3rwr T Reference
       Region 3rwr T 1-87 order
       Region 3rwr T 88-90 disorder
       Region 3rwr T 91-224 order
Seq 1-224
 Evidence X-RAY 3rwr Q Reference
       Region 3rwr Q 1-224 order
Seq 1-224
 Evidence X-RAY 3rwr L Reference
       Region 3rwr L 1-224 order
Seq 1-224 Hetero octamer : IID00828Complex
 Evidence X-RAY 3sr2 C Reference
       Region 3sr2 C 1-85 order
       Region 3sr2 C 86-91 disorder
       Region 3sr2 C 92-224 order
 Evidence X-RAY 3sr2 D Reference
       Region 3sr2 D 1-86 order
       Region 3sr2 D 87-92 disorder
       Region 3sr2 D 93-224 order
 Evidence X-RAY 3sr2 G Reference
       Region 3sr2 G 1-84 order
       Region 3sr2 G 85-91 disorder
       Region 3sr2 G 92-224 order
 Evidence X-RAY 3sr2 H Reference
       Region 3sr2 H 1-83 order
       Region 3sr2 H 84-89 disorder
       Region 3sr2 H 90-224 order
Seq 1-224
 Evidence X-RAY 3rwr W Reference
       Region 3rwr W 1-224 order
Seq 1-224
 Evidence X-RAY 3rwr O Reference
       Region 3rwr O 1-224 order
Seq 1-224 Hetero tetramer : IID00828Complex
 Evidence X-RAY 3q4f A Reference
       Region 3q4f A 1-224 order
 Evidence X-RAY 3q4f B Reference
       Region 3q4f B 1-224 order
 Evidence X-RAY 3q4f E Reference
       Region 3q4f E 1-224 order
 Evidence X-RAY 3q4f F Reference
       Region 3q4f F 1-224 order
Seq 1-224
 Evidence X-RAY 3rwr M Reference
       Region 3rwr M 1-224 order
Seq 1-224
 Evidence X-RAY 3rwr X Reference
       Region 3rwr X 1-224 order
Seq 1-224
 Evidence X-RAY 3rwr S Reference
       Region 3rwr S 1-83 order
       Region 3rwr S 84-92 disorder
       Region 3rwr S 93-224 order
Seq 1-224 Hetero octamer : IID00828Complex
 Evidence X-RAY 3rwr D Reference
       Region 3rwr D 1-224 order
 Evidence X-RAY 3rwr E Reference
       Region 3rwr E 1-224 order
 Evidence X-RAY 3rwr H Reference
       Region 3rwr H 1-224 order
 Evidence X-RAY 3rwr I Reference
       Region 3rwr I 1-224 order
Seq 1-233 Homo dimer :
 Evidence X-RAY 2qm4 A Reference
       Region 2qm4 A 1-230 order
       Region 2qm4 A 231-233 disorder
 Evidence X-RAY 2qm4 B Reference
       Region 2qm4 B 1-169 order
       Region 2qm4 B 170-173 disorder
       Region 2qm4 B 174-227 order
       Region 2qm4 B 228-233 disorder
 Evidence X-RAY 2qm4 C Reference
       Region 2qm4 C 1-227 order
       Region 2qm4 C 228-233 disorder
 Evidence X-RAY 2qm4 D Reference
       Region 2qm4 D 1-84 order
       Region 2qm4 D 85-90 disorder
       Region 2qm4 D 91-229 order
       Region 2qm4 D 230-233 disorder
 Evidence X-RAY 2r9a A Reference
       Region 2r9a A 1-84 order
       Region 2r9a A 85-92 disorder
       Region 2r9a A 93-224 order
 Evidence X-RAY 2r9a B Reference
       Region 2r9a B 1-79 order
       Region 2r9a B 80-92 disorder
       Region 2r9a B 93-224 order
 Evidence X-RAY 3w03 A Reference
       Region 3w03 A 1-230 order
       Region 3w03 A 231-233 disorder
 Evidence X-RAY 3w03 B Reference
       Region 3w03 B 1-169 order
       Region 3w03 B 170-173 disorder
       Region 3w03 B 174-227 order
       Region 3w03 B 228-233 disorder
Seq 281-299 Hetero hexamer : IID00024Complex
 Evidence X-RAY 6erh M Reference
       Region 6erh M 281-292 disorder
       Region 6erh M 293-299 order
 Evidence X-RAY 6erh T Reference
       Region 6erh T 281-293 disorder
       Region 6erh T 294-299 order
Seq 287-299 Hetero hexamer : IID00024Complex
 Evidence X-RAY 6erg C Reference
       Region 6erg C 287-292 disorder
       Region 6erg C 293-299 order
 Evidence X-RAY 6erg F Reference
       Region 6erg F 287-292 disorder
       Region 6erg F 293-299 order
SeqProS predicted 293-299 This region is predicted to be disordered by NeProc and AlphaFold (pLDDT < 68.5). Hetero hexamer : IID00024Complex
       Region 6erg C 293-299 order
       Region 6erg F 293-299 order
SeqProS predicted 293-299 This region is predicted to be disordered by NeProc and AlphaFold (pLDDT < 68.5). Hetero hexamer : IID00024Complex
       Region 6erh M 293-299 order
       Region 6erh T 294-299 order
Seqphosphorylation
    287-287 Phosphoserine
    266-266 Phosphothreonine
    263-263 Phosphoserine
    251-251 Phosphoserine; by PRKDC
    245-245 Phosphoserine; by PRKDC
    203-203 Phosphoserine; by PRKDC
    132-132 Phosphoserine; by PRKDC
 
Prediction
NeProc
Disorder 1-4,225-299
Order 5-224
ProS 1-4,225-234,293-299
AlphaFold
Disorder 233-299
Order 1-232
Function
Function in SwissProt
DNA repair protein involved in DNA non-homologous end joining (NHEJ); required for double-strand break (DSB) repair and V(D)J recombination (PubMed:16439204, PubMed:16439205, PubMed:17717001, PubMed:17317666, PubMed:17470781, PubMed:18644470, PubMed:20558749, PubMed:26100018, PubMed:18158905). Plays a key role in NHEJ by promoting the ligation of various mismatched and non-cohesive ends (PubMed:17717001, PubMed:17470781, PubMed:19056826). Together with PAXX, collaborates with DNA polymerase lambda (POLL) to promote joining of non-cohesive DNA ends (PubMed:30250067, PubMed:25670504). May act in concert with XRCC5-XRCC6 (Ku) to stimulate XRCC4-mediated joining of blunt ends and several types of mismatched ends that are non-complementary or partially complementary (PubMed:16439204, PubMed:16439205, PubMed:17317666, PubMed:17470781). In some studies, has been shown to associate with XRCC4 to form alternating helical filaments that bridge DNA and act like a bandage, holding together the broken DNA until it is repaired (PubMed:22228831, PubMed:26100018, PubMed:28500754, PubMed:27437582, PubMed:21775435, PubMed:22287571, PubMed:21768349). Alternatively, it has also been shown that rather than forming filaments, a single NHEJ1 dimer interacts through both head domains with XRCC4 to promote the close alignment of DNA ends (By similarity). The XRCC4-NHEJ1/XLF subcomplex binds to the DNA fragments of a DSB in a highly diffusive manner and robustly bridges two independent DNA molecules, holding the broken DNA fragments in close proximity to one other (PubMed:28500754, PubMed:27437582). The mobility of the bridges ensures that the ends remain accessible for further processing by other repair factors (PubMed:27437582). Binds DNA in a length-dependent manner (PubMed:17317666, PubMed:18158905).
Biological Process
See also
Diagram with PDB data
XRCC6/XRCC5/NHEJ1Complex of XLF and heterodimer Ku bound to DNA