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IID00036
UniprotP27694
ProteinReplication protein A 70 kDa DNA-binding subunit
GeneRPA1
OrganismHomo sapiens
Sequence LLPS PhaSepDB
PhaSePro
LLPSDB
DrLLPS
Network xml rdf
Structure
Experiment
  :order   disorder   conflict   PDB cluster   ProS   Pfam Domain   SEG
616
 order/disorder by at least rule
     disorder by at least rule
     order by at least rule
 order/disorder by majority rule
Seq 1-120 Hetero dimer : Q96LW4
 Evidence X-RAY 5n8a A Reference
       Region 5n8a A 1-120 order
Seq 1-120 Hetero dimer : Q8WXE1
 Evidence X-RAY 4nb3 A Reference
       Region 4nb3 A 1-120 order
 Evidence X-RAY 4nb3 B Reference
       Region 4nb3 B 1-120 order
 Evidence X-RAY 7xv4 A Reference
       Region 7xv4 A 1-34 order
       Region 7xv4 A 35-38 disorder
       Region 7xv4 A 39-120 order
Seq 1-120 Hetero dimer : IID00806Complex
 Evidence X-RAY 8k00 A Reference
       Region 8k00 A 1-119 order
       Region 8k00 A 120-120 disorder
Seq 1-120 Hetero dimer : Q96LW4
 Evidence X-RAY 5n85 A Reference
       Region 5n85 A 1-120 order
Seq 1-120 Monomer :
 Evidence X-RAY 2b29 A Reference
       Region 2b29 A 1-2 disorder
       Region 2b29 A 3-120 order
 Evidence X-RAY 5e7n A Reference
       Region 5e7n A 1-120 order
 Evidence X-RAY 4ijh A Reference
       Region 4ijh A 1-120 order
 Evidence X-RAY 4ijl A Reference
       Region 4ijl A 1-120 order
 Evidence X-RAY 4ipc A Reference
       Region 4ipc A 1-120 order
 Evidence X-RAY 4ipd A Reference
       Region 4ipd A 1-120 order
 Evidence X-RAY 4ipg A Reference
       Region 4ipg A 1-120 order
 Evidence X-RAY 4iph A Reference
       Region 4iph A 1-120 order
 Evidence X-RAY 4luo A Reference
       Region 4luo A 1-120 order
 Evidence X-RAY 4luv A Reference
       Region 4luv A 1-120 order
 Evidence X-RAY 4luz A Reference
       Region 4luz A 1-120 order
 Evidence X-RAY 4lw1 A Reference
       Region 4lw1 A 1-120 order
 Evidence X-RAY 4lwc A Reference
       Region 4lwc A 1-120 order
 Evidence X-RAY 4o0a A Reference
       Region 4o0a A 1-120 order
 Evidence X-RAY 4r4c A Reference
       Region 4r4c A 1-120 order
 Evidence X-RAY 4r4i A Reference
       Region 4r4i A 1-120 order
 Evidence X-RAY 4r4o A Reference
       Region 4r4o A 1-120 order
 Evidence X-RAY 4r4q A Reference
       Region 4r4q A 1-120 order
 Evidence X-RAY 4r4t A Reference
       Region 4r4t A 1-120 order
 Evidence NMR 1ewi A Reference
       Region 1ewi A 1-114 order
Seq 1-120 Hetero dimer : Q99638
 Evidence X-RAY 8jzy A Reference
       Region 8jzy A 1-34 order
       Region 8jzy A 35-38 disorder
       Region 8jzy A 39-119 order
       Region 8jzy A 120-120 disorder
Seq 1-120 Hetero dimer : Q8NG08
 Evidence X-RAY 7xv1 A Reference
       Region 7xv1 A 1-34 order
       Region 7xv1 A 35-37 disorder
       Region 7xv1 A 38-120 order
Seq 1-120 Hetero hexamer : IID00015Complex
 Evidence X-RAY 2b3g A Reference
       Region 2b3g A 1-34 order
       Region 2b3g A 35-37 disorder
       Region 2b3g A 38-120 order
Seq 1-120 Hetero dimer : Q9NY74
 Evidence X-RAY 8jzv A Reference
       Region 8jzv A 1-34 order
       Region 8jzv A 35-38 disorder
       Region 8jzv A 39-119 order
       Region 8jzv A 120-120 disorder
Seq 1-120 Hetero dimer : IID00421Complex
 Evidence X-RAY 7xuv A Reference
       Region 7xuv A 1-34 order
       Region 7xuv A 35-38 disorder
       Region 7xuv A 39-118 order
       Region 7xuv A 119-120 disorder
Seq 1-121 Hetero tetramer : IID00246Complex
 Evidence X-RAY 7xut A Reference
       Region 7xut A 1-35 order
       Region 7xut A 36-37 disorder
       Region 7xut A 38-121 order
 Evidence X-RAY 7xut B Reference
       Region 7xut B 1-121 order
Seq 1-121 Hetero dimer : P54132
 Evidence X-RAY 7xuw A Reference
       Region 7xuw A 1-3 disorder
       Region 7xuw A 4-121 order
Seq 1-121 Hetero dimer : P54132
 Evidence X-RAY 7xv0 A Reference
       Region 7xv0 A 1-36 order
       Region 7xv0 A 37-37 disorder
       Region 7xv0 A 38-121 order
Seq 3-120 Hetero octamer : P51530
 Evidence X-RAY 5eay A Reference
       Region 5eay A 3-34 order
       Region 5eay A 35-37 disorder
       Region 5eay A 38-120 order
 Evidence X-RAY 5eay B Reference
       Region 5eay B 3-34 order
       Region 5eay B 35-37 disorder
       Region 5eay B 38-120 order
 Evidence X-RAY 5eay C Reference
       Region 5eay C 3-4 disorder
       Region 5eay C 5-34 order
       Region 5eay C 35-38 disorder
       Region 5eay C 39-120 order
 Evidence X-RAY 5eay D Reference
       Region 5eay D 3-3 disorder
       Region 5eay D 4-34 order
       Region 5eay D 35-38 disorder
       Region 5eay D 39-119 order
       Region 5eay D 120-120 disorder
Seqdisorder 116-168
 Evidence NMR Reference
       Region 116-168 disorder
Seq 181-422 Monomer :
 Evidence X-RAY 1jmc A Reference
       Region 1jmc A 181-182 disorder
       Region 1jmc A 183-420 order
       Region 1jmc A 421-422 disorder
Seq 182-432 Homo dimer :
 Evidence X-RAY 1fgu A Reference
       Region 1fgu A 182-426 order
       Region 1fgu A 427-432 disorder
 Evidence X-RAY 1fgu B Reference
       Region 1fgu B 182-289 order
       Region 1fgu B 290-297 disorder
       Region 1fgu B 298-426 order
       Region 1fgu B 427-432 disorder
Seq 436-616 Hetero hexamer : IID00026Complex,IID00040Complex
 Evidence X-RAY 1l1o C Reference
       Region 1l1o C 436-438 disorder
       Region 1l1o C 439-581 order
       Region 1l1o C 582-586 disorder
       Region 1l1o C 587-616 order
 Evidence X-RAY 1l1o F Reference
       Region 1l1o F 436-438 disorder
       Region 1l1o F 439-579 order
       Region 1l1o F 580-586 disorder
       Region 1l1o F 587-616 order
Seqphosphorylation
    384-384 Phosphoserine
    191-191 Phosphothreonine
    180-180 Phosphothreonine
    384-384 Phosphoserine
    191-191 Phosphothreonine
    180-180 Phosphothreonine
Seqacetylation
    259-259 N6-acetyllysine; alternate
    167-167 N6-acetyllysine; alternate
    163-163 N6-acetyllysine; alternate
    1-1 N-acetylmethionine
    259-259 N6-acetyllysine; alternate
    167-167 N6-acetyllysine; alternate
    163-163 N6-acetyllysine; alternate
    1-1 N-acetylmethionine
 
Prediction
NeProc
Disorder 1-1,112-180,422-438
Order 2-33,40-111,181-421,439-616
ProS 112-119,422-426
AlphaFold
Disorder 1-3,120-182,269-269,429-440,612-612,615-616
Order 4-119,183-268,270-428,441-611,613-614
Pfam Hmmer
PF04057 4-104 3.2e-59
PF01336 197-286 9.3e-10
PF08646 461-606 4.9e-87
SEG 124-145
Function
Function in SwissProt
As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism (PubMed:27723720, PubMed:27723717). Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage (PubMed:9430682). In the cellular response to DNA damage, the RPA complex controls DNA repair and DNA damage checkpoint activation. Through recruitment of ATRIP activates the ATR kinase a master regulator of the DNA damage response (PubMed:24332808). It is required for the recruitment of the DNA double-strand break repair factors RAD51 and RAD52 to chromatin in response to DNA damage (PubMed:17765923). Also recruits to sites of DNA damage proteins like XPA and XPG that are involved in nucleotide excision repair and is required for this mechanism of DNA repair (PubMed:7697716). Also plays a role in base excision repair (BER) probably through interaction with UNG (PubMed:9765279). Also recruits SMARCAL1/HARP, which is involved in replication fork restart, to sites of DNA damage. Plays a role in telomere maintenance (PubMed:17959650, PubMed:34767620). As part of the alternative replication protein A complex, aRPA, binds single-stranded DNA and probably plays a role in DNA repair. Compared to the RPA2-containing, canonical RPA complex, may not support chromosomal DNA replication and cell cycle progression through S-phase. The aRPA may not promote efficient priming by DNA polymerase alpha but could support DNA synthesis by polymerase delta in presence of PCNA and replication factor C (RFC), the dual incision/excision reaction of nucleotide excision repair and RAD51-dependent strand exchange (PubMed:19996105).
Biological Process
See also
Diagram with PDB data
XPA/ERCC1Solution structure of a ERCC1-XPA heterodimer
BRCA2/RAD51Crystal structure of a RAD51-BRCA2 BRC repeat complex