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IID00906
UniprotO00213
ProteinAmyloid beta precursor protein binding family B member 1
GeneAPBB1
OrganismHomo sapiens
Sequence LLPS PhaSepDB
PhaSePro
LLPSDB
DrLLPS
Network xml rdf
Structure
Experiment
  :order   disorder   conflict   PDB cluster   ProS   Pfam Domain   SEG
710
 order/disorder by at least rule
     disorder by at least rule
     order by at least rule
 order/disorder by majority rule
Seq 241-290 Monomer :
 Evidence NMR 2e45 A Reference
       Region 2e45 A 241-290 order
       Region 2e45 A 241-251 high_rmsd
       Region 2e45 A 285-290 high_rmsd
 Evidence X-RAY 2idh A Reference
       Region 2idh A 253-253 disorder
       Region 2idh A 254-283 order
       Region 2idh A 284-289 disorder
 Evidence X-RAY 2idh B Reference
       Region 2idh B 253-253 disorder
       Region 2idh B 254-284 order
       Region 2idh B 285-289 disorder
 Evidence X-RAY 2idh C Reference
       Region 2idh C 253-253 disorder
       Region 2idh C 254-283 order
       Region 2idh C 284-289 disorder
 Evidence X-RAY 2idh D Reference
       Region 2idh D 253-285 order
       Region 2idh D 286-289 disorder
 Evidence X-RAY 2idh E Reference
       Region 2idh E 253-253 disorder
       Region 2idh E 254-283 order
       Region 2idh E 284-289 disorder
 Evidence X-RAY 2idh F Reference
       Region 2idh F 253-253 disorder
       Region 2idh F 254-283 order
       Region 2idh F 284-289 disorder
 Evidence X-RAY 2idh G Reference
       Region 2idh G 253-253 disorder
       Region 2idh G 254-284 order
       Region 2idh G 285-289 disorder
 Evidence X-RAY 2idh H Reference
       Region 2idh H 253-284 order
       Region 2idh H 285-289 disorder
Seq 253-289 Hetero dimer :
 Evidence X-RAY 2oei A Reference
       Region 2oei A 253-288 order
       Region 2oei A 289-289 disorder
Seq 253-289 Hetero dimer : Q8N8S7
 Evidence X-RAY 2ho2 A Reference
       Region 2ho2 A 253-285 order
       Region 2ho2 A 286-289 disorder
Seq 366-505 Monomer :
 Evidence X-RAY 3d8d A Reference
       Region 3d8d A 366-459 order
       Region 3d8d A 460-461 disorder
       Region 3d8d A 462-505 order
 Evidence X-RAY 3d8d B Reference
       Region 3d8d B 366-459 order
       Region 3d8d B 460-461 disorder
       Region 3d8d B 462-505 order
 Evidence X-RAY 3d8e A Reference
       Region 3d8e A 366-367 disorder
       Region 3d8e A 368-403 order
       Region 3d8e A 404-419 disorder
       Region 3d8e A 420-456 order
       Region 3d8e A 457-457 disorder
       Region 3d8e A 458-505 order
 Evidence X-RAY 3d8e B Reference
       Region 3d8e B 366-400 order
       Region 3d8e B 401-418 disorder
       Region 3d8e B 419-458 order
       Region 3d8e B 459-460 disorder
       Region 3d8e B 461-471 order
       Region 3d8e B 472-473 disorder
       Region 3d8e B 474-505 order
 Evidence X-RAY 3d8e C Reference
       Region 3d8e C 366-367 disorder
       Region 3d8e C 368-403 order
       Region 3d8e C 404-420 disorder
       Region 3d8e C 421-456 order
       Region 3d8e C 457-457 disorder
       Region 3d8e C 458-505 order
 Evidence X-RAY 3d8e D Reference
       Region 3d8e D 366-401 order
       Region 3d8e D 402-418 disorder
       Region 3d8e D 419-458 order
       Region 3d8e D 459-460 disorder
       Region 3d8e D 461-471 order
       Region 3d8e D 472-472 disorder
       Region 3d8e D 473-505 order
 Evidence X-RAY 3d8f A Reference
       Region 3d8f A 366-404 order
       Region 3d8f A 405-419 disorder
       Region 3d8f A 420-505 order
 Evidence X-RAY 3d8f B Reference
       Region 3d8f B 366-402 order
       Region 3d8f B 403-414 disorder
       Region 3d8f B 415-456 order
       Region 3d8f B 457-461 disorder
       Region 3d8f B 462-505 order
 Evidence X-RAY 3d8f C Reference
       Region 3d8f C 366-404 order
       Region 3d8f C 405-419 disorder
       Region 3d8f C 420-505 order
 Evidence X-RAY 3d8f D Reference
       Region 3d8f D 366-402 order
       Region 3d8f D 403-414 disorder
       Region 3d8f D 415-456 order
       Region 3d8f D 457-461 disorder
       Region 3d8f D 462-505 order
Seq 534-667 Hetero tetramer : IID00294Complex
 Evidence X-RAY 3dxc A Reference
       Region 3dxc A 534-536 disorder
       Region 3dxc A 537-666 order
       Region 3dxc A 667-667 disorder
 Evidence X-RAY 3dxc C Reference
       Region 3dxc C 534-542 disorder
       Region 3dxc C 543-665 order
       Region 3dxc C 666-667 disorder
 Evidence X-RAY 3dxd A Reference
       Region 3dxd A 534-536 disorder
       Region 3dxd A 537-667 order
 Evidence X-RAY 3dxd C Reference
       Region 3dxd C 534-542 disorder
       Region 3dxd C 543-665 order
       Region 3dxd C 666-667 disorder
 Evidence X-RAY 3dxe A Reference
       Region 3dxe A 534-542 disorder
       Region 3dxe A 543-666 order
       Region 3dxe A 667-667 disorder
 Evidence X-RAY 3dxe C Reference
       Region 3dxe C 534-536 disorder
       Region 3dxe C 537-666 order
       Region 3dxe C 667-667 disorder
Seq 534-667 Homo tetramer :
 Evidence X-RAY 5nqh A Reference
       Region 5nqh A 534-538 disorder
       Region 5nqh A 539-666 order
       Region 5nqh A 667-667 disorder
 Evidence X-RAY 5nqh B Reference
       Region 5nqh B 534-538 disorder
       Region 5nqh B 539-572 order
       Region 5nqh B 573-576 disorder
       Region 5nqh B 577-665 order
       Region 5nqh B 666-667 disorder
 Evidence X-RAY 5nqh C Reference
       Region 5nqh C 534-538 disorder
       Region 5nqh C 539-663 order
       Region 5nqh C 664-667 disorder
 Evidence X-RAY 5nqh D Reference
       Region 5nqh D 534-538 disorder
       Region 5nqh D 539-572 order
       Region 5nqh D 573-574 disorder
       Region 5nqh D 575-627 order
       Region 5nqh D 628-628 disorder
       Region 5nqh D 629-666 order
       Region 5nqh D 667-667 disorder
Seqphosphorylation
    517-517 Phosphoserine
    547-547 Phosphotyrosine; by ABL1
    610-610 Phosphoserine; by SGK1
    459-459 Phosphoserine; by PKC
Seqacetylation
    701-701 N6-acetyllysine
    204-204 N6-acetyllysine
 
Prediction
NeProc
Disorder 1-364,1-364,487-523,487-523,662-710,662-710
Order 365-486,365-486,524-661,524-661
ProS 11-28,11-28,34-41,34-41,47-58,47-58,66-97,66-97,115-118,115-118,135-139,135-139,219-224,219-224,230-247,230-247,254-261,254-261,268-274,268-274,306-319,306-319,354-364,354-364,493-500,493-500,520-523,520-523,662-665,662-665,683-701,683-701
AlphaFold
Disorder 1-253,284-365,405-414,509-539,666-710
Order 254-283,366-404,415-508,540-665
Pfam Hmmer
370->509 255-283 543->664
PF00397 255-283 2e-09
PF00640 370-509 3.3e-54
PF00640 543-664 3.6e-46
SEG 16-32 ,16-32 ,55-64 ,55-64 ,146-185 ,146-185 ,287-299 ,287-299 ,344-360 ,344-360 ,420-433 ,420-433
Function
Function in SwissProt
Transcription coregulator that can have both coactivator and corepressor functions (PubMed:15031292, PubMed:18468999, PubMed:18922798, PubMed:25342469, PubMed:33938178). Adapter protein that forms a transcriptionally active complex with the gamma-secretase-derived amyloid precursor protein (APP) intracellular domain (PubMed:15031292, PubMed:18468999, PubMed:18922798, PubMed:25342469). Plays a central role in the response to DNA damage by translocating to the nucleus and inducing apoptosis (PubMed:15031292, PubMed:18468999, PubMed:18922798, PubMed:25342469). May act by specifically recognizing and binding histone H2AX phosphorylated on 'Tyr-142' (H2AXY142ph) at double-strand breaks (DSBs), recruiting other pro-apoptosis factors such as MAPK8/JNK1 (PubMed:19234442). Required for histone H4 acetylation at double-strand breaks (DSBs) (PubMed:19234442). Its ability to specifically bind modified histones and chromatin modifying enzymes such as KAT5/TIP60, probably explains its transcription activation activity (PubMed:33938178). Functions in association with TSHZ3, SET and HDAC factors as a transcriptional repressor, that inhibits the expression of CASP4 (PubMed:19343227). Associates with chromatin in a region surrounding the CASP4 transcriptional start site(s) (PubMed:19343227). Involved in hippocampal neurite branching and neuromuscular junction formation, as a result plays a role in spatial memory functioning (By similarity). Plays a role in the maintenance of lens transparency (By similarity). May play a role in muscle cell strength (By similarity). Acts as a molecular adapter that functions in neurite outgrowth by activating the RAC1-ARF6 axis upon insulin treatment (PubMed:36250347).
Biological Process
See also
Diagram with PDB data
APP/APBB1Crystal structure of the intracellular domain of human APP in complex with Fe65-PTB2