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IID00943
UniprotP49711
ProteinTranscriptional repressor CTCF
GeneCTCF
OrganismHomo sapiens
Sequence LLPS PhaSepDB
PhaSePro
LLPSDB
DrLLPS
Network xml rdf
Structure
Experiment
  :order   disorder   conflict   PDB cluster   ProS   Pfam Domain   SEG
727
 order/disorder by at least rule
     disorder by at least rule
     order by at least rule
 order/disorder by majority rule
Seq 222-231 Hetero trimer : IID00642Complex,IID00674Complex
 Evidence X-RAY 6qnx C Reference
       Region 6qnx C 222-222 disorder
       Region 6qnx C 223-231 order
Seq 263-465 Homo dimer :
 Evidence X-RAY 8sss A Reference
       Region 8sss A 263-264 disorder
       Region 8sss A 265-461 order
       Region 8sss A 462-465 disorder
 Evidence X-RAY 8sss D Reference
       Region 8sss D 263-264 disorder
       Region 8sss D 265-462 order
       Region 8sss D 463-465 disorder
 Evidence X-RAY 8sst A Reference
       Region 8sst A 263-264 disorder
       Region 8sst A 265-461 order
       Region 8sst A 462-465 disorder
 Evidence X-RAY 8sst D Reference
       Region 8sst D 263-264 disorder
       Region 8sst D 265-462 order
       Region 8sst D 463-465 disorder
Seq 292-490 Homo dimer :
 Evidence X-RAY 5yef A Reference
       Region 5yef A 292-320 disorder
       Region 5yef A 321-489 order
       Region 5yef A 490-490 disorder
 Evidence X-RAY 5yef B Reference
       Region 5yef B 292-320 disorder
       Region 5yef B 321-332 order
       Region 5yef B 333-334 disorder
       Region 5yef B 335-489 order
       Region 5yef B 490-490 disorder
Seq 292-582 Monomer :
 Evidence X-RAY 5k5h A Reference
       Region 5k5h A 348-349 disorder
       Region 5k5h A 350-460 order
       Region 5k5h A 461-464 disorder
 Evidence X-RAY 5k5i A Reference
       Region 5k5i A 378-489 order
 Evidence X-RAY 5k5j A Reference
       Region 5k5j A 378-489 order
 Evidence X-RAY 5kkq A Reference
       Region 5kkq A 321-463 order
       Region 5kkq A 464-465 disorder
 Evidence X-RAY 5kkq D Reference
       Region 5kkq D 321-465 order
 Evidence X-RAY 5t00 A Reference
       Region 5t00 A 321-462 order
       Region 5t00 A 463-465 disorder
 Evidence X-RAY 5t00 D Reference
       Region 5t00 D 321-321 disorder
       Region 5t00 D 322-464 order
       Region 5t00 D 465-465 disorder
 Evidence X-RAY 5t0u A Reference
       Region 5t0u A 294-462 order
       Region 5t0u A 463-465 disorder
 Evidence X-RAY 5t0u D Reference
       Region 5t0u D 294-462 order
       Region 5t0u D 463-465 disorder
 Evidence X-RAY 5und A Reference
       Region 5und A 348-518 order
       Region 5und A 519-547 disorder
 Evidence X-RAY 5und B Reference
       Region 5und B 348-492 order
       Region 5und B 493-547 disorder
 Evidence X-RAY 5yef G Reference
       Region 5yef G 292-320 disorder
       Region 5yef G 321-489 order
       Region 5yef G 490-490 disorder
 Evidence X-RAY 5yef J Reference
       Region 5yef J 292-320 disorder
       Region 5yef J 321-332 order
       Region 5yef J 333-334 disorder
       Region 5yef J 335-489 order
       Region 5yef J 490-490 disorder
 Evidence X-RAY 5yeg A Reference
       Region 5yeg A 349-349 disorder
       Region 5yeg A 350-487 order
       Region 5yeg A 488-490 disorder
 Evidence X-RAY 5yeg B Reference
       Region 5yeg B 349-489 order
 Evidence X-RAY 5yeh A Reference
       Region 5yeh A 349-487 order
       Region 5yeh A 488-490 disorder
 Evidence X-RAY 5yeh B Reference
       Region 5yeh B 349-487 order
       Region 5yeh B 488-490 disorder
 Evidence X-RAY 8ssu A Reference
       Region 8ssu A 320-552 order
       Region 8ssu A 553-582 disorder
Seq 319-606 Homo dimer :
 Evidence X-RAY 8ssq A Reference
       Region 8ssq A 319-578 order
       Region 8ssq A 579-606 disorder
 Evidence X-RAY 8ssq D Reference
       Region 8ssq D 319-348 disorder
       Region 8ssq D 349-578 order
       Region 8ssq D 579-606 disorder
 Evidence X-RAY 8ssr A Reference
       Region 8ssr A 319-578 order
       Region 8ssr A 579-606 disorder
 Evidence X-RAY 8ssr D Reference
       Region 8ssr D 319-348 disorder
       Region 8ssr D 349-578 order
       Region 8ssr D 579-606 disorder
Seq 399-462 Monomer :
 Evidence NMR 2ct1 A Reference
       Region 2ct1 A 399-462 order
       Region 2ct1 A 399-403 high_rmsd
Seq 405-492 Hetero trimer :
 Evidence X-RAY 5k5l E Reference
       Region 5k5l E 405-435 disorder
       Region 5k5l E 436-491 order
       Region 5k5l E 492-492 disorder
 Evidence X-RAY 5k5l F Reference
       Region 5k5l F 405-435 disorder
       Region 5k5l F 436-492 order
 Evidence X-RAY 5k5l G Reference
       Region 5k5l G 405-407 disorder
       Region 5k5l G 408-491 order
       Region 5k5l G 492-492 disorder
Seq 405-580 Monomer :
 Evidence X-RAY 5yel B Reference
       Region 5yel B 405-430 order
       Region 5yel B 431-433 disorder
       Region 5yel B 434-519 order
       Region 5yel B 520-520 disorder
       Region 5yel B 521-548 order
       Region 5yel B 549-550 disorder
       Region 5yel B 551-578 order
       Region 5yel B 579-580 disorder
 Evidence X-RAY 5yel A Reference
       Region 5yel A 405-405 disorder
       Region 5yel A 406-430 order
       Region 5yel A 431-433 disorder
       Region 5yel A 434-519 order
       Region 5yel A 520-520 disorder
       Region 5yel A 521-548 order
       Region 5yel A 549-550 disorder
       Region 5yel A 551-577 order
       Region 5yel A 578-580 disorder
Seq 515-587 Monomer :
 Evidence NMR 1x6h A Reference
       Region 1x6h A 515-587 order
       Region 1x6h A 515-519 high_rmsd
       Region 1x6h A 582-587 high_rmsd
SeqProS predicted 223-231 This region is predicted to be disordered by NeProc and AlphaFold (pLDDT < 68.5). Hetero trimer : IID00642Complex,IID00674Complex
       Region 6qnx C 223-231 order
Seqphosphorylation
    612-612 Phosphoserine
    610-610 Phosphoserine
    609-609 Phosphoserine
    402-402 Phosphoserine
    374-374 Phosphothreonine
    317-317 Phosphothreonine
    289-289 Phosphothreonine
Seqacetylation
    1-1 N-acetylmethionine
 
Prediction
NeProc
Disorder 1-259,591-727
Order 260-590
ProS 7-28,39-42,48-82,90-100,107-130,152-194,203-259,591-638,668-690,711-727
AlphaFold
Disorder 1-263,290-290,433-433,490-494,550-553,580-715,718-719,721-727
Order 264-289,291-432,434-489,495-549,554-579,716-717,720-720
Pfam Hmmer
294->316 266-288 322->345
SEG 116-131 ,202-211 ,250-264 ,592-606 ,613-648 ,691-708
Function
Function in SwissProt
Chromatin binding factor that binds to DNA sequence specific sites and regulates the 3D structure of chromatin (PubMed:18347100, PubMed:18654629, PubMed:19322193). Binds together strands of DNA, thus forming chromatin loops, and anchors DNA to cellular structures, such as the nuclear lamina (PubMed:18347100, PubMed:18654629, PubMed:19322193). Defines the boundaries between active and heterochromatic DNA via binding to chromatin insulators, thereby preventing interaction between promoter and nearby enhancers and silencers (PubMed:18347100, PubMed:18654629, PubMed:19322193). Plays a critical role in the epigenetic regulation (PubMed:16949368). Participates in the allele-specific gene expression at the imprinted IGF2/H19 gene locus (PubMed:16107875, PubMed:16815976, PubMed:17827499). On the maternal allele, binding within the H19 imprinting control region (ICR) mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to IGF2 (By similarity). Mediates interchromosomal association between IGF2/H19 and WSB1/NF1 and may direct distant DNA segments to a common transcription factory (By similarity). Regulates asynchronous replication of IGF2/H19 (By similarity). Plays a critical role in gene silencing over considerable distances in the genome (By similarity). Preferentially interacts with unmethylated DNA, preventing spreading of CpG methylation and maintaining methylation-free zones (PubMed:18413740). Inversely, binding to target sites is prevented by CpG methylation (PubMed:18413740). Plays an important role in chromatin remodeling (PubMed:18413740). Can dimerize when it is bound to different DNA sequences, mediating long-range chromatin looping (PubMed:12191639). Causes local loss of histone acetylation and gain of histone methylation in the beta-globin locus, without affecting transcription (PubMed:12191639). When bound to chromatin, it provides an anchor point for nucleosomes positioning (PubMed:12191639). Seems to be essential for homologous X-chromosome pairing (By similarity). May participate with Tsix in establishing a regulatable epigenetic switch for X chromosome inactivation (PubMed:11743158). May play a role in preventing the propagation of stable methylation at the escape genes from X-inactivation (PubMed:11743158). Involved in sister chromatid cohesion (PubMed:12191639). Associates with both centromeres and chromosomal arms during metaphase and required for cohesin localization to CTCF sites (PubMed:18550811). Plays a role in the recruitment of CENPE to the pericentromeric/centromeric regions of the chromosome during mitosis (PubMed:26321640). Acts as a transcriptional repressor binding to promoters of vertebrate MYC gene and BAG1 gene (PubMed:8649389, PubMed:9591631, PubMed:18413740). Also binds to the PLK and PIM1 promoters (PubMed:12191639). Acts as a transcriptional activator of APP (PubMed:9407128). Regulates APOA1/C3/A4/A5 gene cluster and controls MHC class II gene expression (PubMed:18347100, PubMed:19322193). Plays an essential role in oocyte and preimplantation embryo development by activating or repressing transcription (By similarity). Seems to act as tumor suppressor (PubMed:12191639).