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IID00994
UniprotQ8IZQ1
ProteinWD repeat and FYVE domain-containing protein 3
GeneWDFY3
OrganismHomo sapiens
Sequence LLPS PhaSepDB
PhaSePro
LLPSDB
DrLLPS
xml rdf
Structure
Experiment
  :order   disorder   conflict   PDB cluster   ProS   Pfam Domain   SEG
3526
 order/disorder by at least rule
     disorder by at least rule
     order by at least rule
 order/disorder by majority rule
Seq 3341-3354 Hetero dimer : IID00921Complex
 Evidence X-RAY 3wim B Reference
       Region 3wim B 3341-3352 order
       Region 3wim B 3353-3354 disorder
Seq 3444-3518 Monomer :
 Evidence NMR 6w9n A Reference
       Region 6w9n A 3444-3518 order
       Region 6w9n A 3444-3455 high_rmsd
SeqProS predicted 3341-3352 This region is predicted to be disordered by NeProc and ColabFold (pLDDT < 68.5). Hetero dimer : IID00921Complex
       Region 3wim B 3341-3352 order
Seqphosphorylation
    1942-1942 Phosphoserine
    2278-2278 Phosphoserine
    2492-2492 Phosphoserine
    3339-3339 Phosphoserine
    3335-3335 Phosphoserine
 
Prediction
NeProc
Disorder 1-20,172-179,357-362,528-538,668-672,787-841,954-1013,1068-1083,1126-1131,1167-1176,1230-1240,1603-1627,1821-1860,1908-1953,2109-2113,2262-2295,2398-2519,2596-2603,2665-2694,2974-2996,3262-3381,3518-3526
Order 21-166,180-322,329-356,363-522,539-667,673-782,842-953,1014-1067,1089-1125,1132-1166,1177-1229,1241-1600,1628-1798,1805-1820,1861-1907,1954-2027,2038-2108,2114-2175,2186-2261,2296-2361,2366-2397,2520-2595,2604-2664,2695-2973,2997-3261,3382-3517
ProS 1-9,791-800,811-814,825-831,954-957,965-972,1126-1131,1833-1852,1928-1932,2262-2295,2398-2402,2414-2459,2473-2477,2665-2678,2680-2684,2974-2992,3262-3276,3282-3298,3309-3356,3374-3381,3521-3526
Pfam Hmmer
3117->3155 2695-2976 3449->3515
SEG 463-481 ,1306-1323 ,1408-1421 ,1629-1645 ,3251-3264 ,3276-3296 ,3325-3336
Function
Function in SwissProt
Required for selective macroautophagy (aggrephagy). Acts as an adapter protein by linking specific proteins destined for degradation to the core autophagic machinery members, such as the ATG5-ATG12-ATG16L E3-like ligase, SQSTM1 and LC3 (PubMed:20417604). Along with p62/SQSTM1, involved in the formation and autophagic degradation of cytoplasmic ubiquitin-containing inclusions (p62 bodies, ALIS/aggresome-like induced structures). Along with SQSTM1, required to recruit ubiquitinated proteins to PML bodies in the nucleus (PubMed:20168092). Important for normal brain development. Essential for the formation of axonal tracts throughout the brain and spinal cord, including the formation of the major forebrain commissures. Involved in the ability of neural cells to respond to guidance cues. Required for cortical neurons to respond to the trophic effects of netrin-1/NTN1 (By similarity). Regulates Wnt signaling through the removal of DVL3 aggregates, likely in an autophagy-dependent manner. This process may be important for the determination of brain size during embryonic development (PubMed:27008544). May regulate osteoclastogenesis by acting on the TNFSF11/RANKL - TRAF6 pathway (By similarity). After cytokinetic abscission, involved in midbody remnant degradation (PubMed:24128730). In vitro strongly binds to phosphatidylinositol 3-phosphate (PtdIns3P) (PubMed:15292400).