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IID50439
UniprotP36594
ProteinDNA-directed RNA polymerase II subunit rpb1
Generpb1
OrganismSchizosaccharomyces pombe (strain 972 / ATCC 24843)
Sequence LLPS PhaSepDB
PhaSePro
LLPSDB
DrLLPS
Network xml rdf
Structure
Experiment
  :order   disorder   conflict   PDB cluster   ProS   Pfam Domain   SEG
1752
 order/disorder by at least rule
     disorder by at least rule
     order by at least rule
 order/disorder by majority rule
Seq 1-1752 Hetero dodecamer : O14459,O74635,O74825,P36595,P37382,P87123,Q02061,Q09191,Q92399
 Evidence X-RAY 3h0g A Reference
       Region 3h0g A 1-1 disorder
       Region 3h0g A 2-1497 order
       Region 3h0g A 1498-1752 disorder
 Evidence X-RAY 3h0g M Reference
       Region 3h0g M 1-1 disorder
       Region 3h0g M 2-1459 order
       Region 3h0g M 1460-1490 disorder
       Region 3h0g M 1491-1508 order
       Region 3h0g M 1509-1752 disorder
Seq 1704-1724 Hetero dimer : IID50316Complex
 Evidence X-RAY 4pz6 Q Reference
       Region 4pz6 Q 1704-1707 disorder
       Region 4pz6 Q 1708-1715 order
       Region 4pz6 Q 1716-1724 disorder
 Evidence X-RAY 4pz6 P Reference
       Region 4pz6 P 1704-1707 disorder
       Region 4pz6 P 1708-1715 order
       Region 4pz6 P 1716-1724 disorder
SeqProS verified 1708-1715 Hetero dimer : IID50316Complex
       Region 4pz6 P 1708-1715 order
       Region 4pz6 Q 1708-1715 order
       Region 3h0g M 1509-1752 disorder
Seqphosphorylation
    1531-1531 Phosphotyrosine
    1529-1529 Phosphoserine
    1506-1506 Phosphoserine
    1499-1499 Phosphoserine
    1489-1489 Phosphoserine
 
Prediction
NeProc
Disorder 156-172,261-265,325-343,1250-1257,1464-1752
Order 1-155,173-260,266-324,344-1249,1259-1463
ProS 156-172,325-343,1482-1508,1650-1670,1687-1698,1703-1725,1730-1752
AlphaFold
Disorder 1-7,153-171,195-202,260-260,598-604,712-713,1083-1097,1180-1180,1183-1183,1186-1186,1248-1261,1365-1365,1460-1752
Order 8-152,172-194,203-259,261-597,605-711,714-1082,1098-1179,1181-1182,1184-1185,1187-1247,1262-1364,1366-1459
Pfam Hmmer
348->513 13-346 516->675
SEG 246-258 ,565-577 ,1240-1257 ,1548-1752
Function
Function in SwissProt
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB1 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template. At the start of transcription, a single-stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol II. A bridging helix emanates from RPB1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol II by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition. During transcription elongation, Pol II moves on the template as the transcript elongates. Elongation is influenced by the phosphorylation status of the C-terminal domain (CTD) of Pol II largest subunit (RPB1), which serves as a platform for assembly of factors that regulate transcription initiation, elongation, termination and mRNA processing (By similarity).