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IID00852
UniprotQ8WUM4
ProteinProgrammed cell death 6-interacting protein
GenePDCD6IP
OrganismHomo sapiens
Sequence LLPS PhaSepDB
PhaSePro
LLPSDB
DrLLPS
Network xml rdf
Structure
Experiment
  :order   disorder   conflict   PDB cluster   ProS   Pfam Domain   SEG
868
 order/disorder by at least rule
     disorder by at least rule
     order by at least rule
 order/disorder by majority rule
Seq 1-359 Hetero dimer : IID00873Complex
 Evidence X-RAY 3c3o A Reference
       Region 3c3o A 1-1 disorder
       Region 3c3o A 2-358 order
       Region 3c3o A 359-359 disorder
Seq 1-359 Hetero dimer : P04862
 Evidence X-RAY 6kp3 A Reference
       Region 6kp3 A 1-1 disorder
       Region 6kp3 A 2-358 order
       Region 6kp3 A 359-359 disorder
Seq 1-359 Monomer :
 Evidence X-RAY 2oew A Reference
       Region 2oew A 1-358 order
       Region 2oew A 359-359 disorder
Seq 1-359 Hetero dimer : IID00860Complex
 Evidence X-RAY 3c3r A Reference
       Region 3c3r A 1-1 disorder
       Region 3c3r A 2-358 order
       Region 3c3r A 359-359 disorder
 Evidence X-RAY 5v3r A Reference
       Region 5v3r A 1-1 disorder
       Region 5v3r A 2-358 order
       Region 5v3r A 359-359 disorder
 Evidence X-RAY 5wa1 A Reference
       Region 5wa1 A 1-358 order
Seq 1-359 Hetero dimer : IID00876Complex
 Evidence X-RAY 3c3q A Reference
       Region 3c3q A 1-1 disorder
       Region 3c3q A 2-358 order
       Region 3c3q A 359-359 disorder
Seq 1-698 Monomer :
 Evidence X-RAY 2oev A Reference
       Region 2oev A 1-1 disorder
       Region 2oev A 2-698 order
Seq 1-698 Hetero dimer : Q02843
 Evidence X-RAY 2xs8 A Reference
       Region 2xs8 A 1-1 disorder
       Region 2xs8 A 2-698 order
Seq 1-698 Hetero dimer : P05893
 Evidence X-RAY 2xs1 A Reference
       Region 2xs1 A 1-1 disorder
       Region 2xs1 A 2-698 order
Seq 2-698 Hetero dimer : Q9WC62
 Evidence X-RAY 2r02 A Reference
       Region 2r02 A 2-698 order
Seq 2-698 Hetero dimer : P69732
 Evidence X-RAY 2r03 A Reference
       Region 2r03 A 2-698 order
Seq 2-698 Hetero dimer : P35962
 Evidence X-RAY 2r05 A Reference
       Region 2r05 A 2-698 order
Seq 355-708 Monomer :
 Evidence X-RAY 2ojq A Reference
       Region 2ojq A 360-702 order
 Evidence X-RAY 4jjy A Reference
       Region 4jjy A 355-360 disorder
       Region 4jjy A 361-701 order
       Region 4jjy A 702-708 disorder
 Evidence X-RAY 4jjy B Reference
       Region 4jjy B 355-360 disorder
       Region 4jjy B 361-701 order
       Region 4jjy B 702-708 disorder
Seq 360-702 Homo dimer :
 Evidence X-RAY 2oex A Reference
       Region 2oex A 360-360 disorder
       Region 2oex A 361-702 order
 Evidence X-RAY 2oex B Reference
       Region 2oex B 360-361 disorder
       Region 2oex B 362-702 order
Seq 797-809 Hetero trimer : IID00843Complex
 Evidence X-RAY 3e1r C Reference
       Region 3e1r C 797-809 order
 Evidence X-RAY 3wuv C Reference
       Region 3wuv C 797-806 order
 Evidence X-RAY 3wuv F Reference
       Region 3wuv F 797-806 order
 Evidence X-RAY 3wuv I Reference
       Region 3wuv I 797-806 order
 Evidence X-RAY 3wuv L Reference
       Region 3wuv L 797-806 order
 Evidence X-RAY 3wuv O Reference
       Region 3wuv O 797-806 order
 Evidence X-RAY 3wuv R Reference
       Region 3wuv R 797-806 order
Seq 799-812 Hetero dimer : O75340
 Evidence X-RAY 2zne C Reference
       Region 2zne C 799-799 disorder
       Region 2zne C 800-812 order
 Evidence X-RAY 2zne D Reference
       Region 2zne D 799-810 order
       Region 2zne D 811-812 disorder
SeqProS predicted 797-809 This region is predicted to be disordered by NeProc and AlphaFold (pLDDT < 68.5). Hetero trimer : IID00843Complex
       Region 3e1r C 797-809 order
       Region 3wuv C 797-806 order
       Region 3wuv F 797-806 order
       Region 3wuv I 797-806 order
       Region 3wuv L 797-806 order
       Region 3wuv O 797-806 order
       Region 3wuv R 797-806 order
SeqProS predicted 799-812 This region is predicted to be disordered by NeProc and AlphaFold (pLDDT < 68.5). Hetero dimer : O75340
       Region 2zne C 800-812 order
       Region 2zne D 799-810 order
Seqphosphorylation
    479-479 Phosphothreonine
    481-481 Phosphoserine
    730-730 Phosphoserine
    738-738 Phosphothreonine
    741-741 Phosphothreonine
Seqacetylation
    2-2 N-acetylalanine
    215-215 N6-acetyllysine
 
Prediction
NeProc
Disorder 536-544,706-868
Order 1-535,545-705
ProS 706-709,865-868
AlphaFold
Disorder 1-2,101-108,716-868
Order 3-100,109-715
Pfam Hmmer
PF03097 3-382 1.4e-176
SEG 448-462 ,548-559 ,736-769 ,778-811 ,839-868
Function
Function in SwissProt
Multifunctional protein involved in endocytosis, multivesicular body biogenesis, membrane repair, cytokinesis, apoptosis and maintenance of tight junction integrity. Class E VPS protein involved in concentration and sorting of cargo proteins of the multivesicular body (MVB) for incorporation into intralumenal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome. Binds to the phospholipid lysobisphosphatidic acid (LBPA) which is abundant in MVBs internal membranes. The MVB pathway requires the sequential function of ESCRT-O, -I,-II and -III complexes (PubMed:14739459). The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis (PubMed:17853893, PubMed:17556548). Adapter for a subset of ESCRT-III proteins, such as CHMP4, to function at distinct membranes. Required for completion of cytokinesis (PubMed:17853893, PubMed:17556548, PubMed:18641129). May play a role in the regulation of both apoptosis and cell proliferation. Regulates exosome biogenesis in concert with SDC1/4 and SDCBP (PubMed:22660413). By interacting with F-actin, PARD3 and TJP1 secures the proper assembly and positioning of actomyosin-tight junction complex at the apical sides of adjacent epithelial cells that defines a spatial membrane domain essential for the maintenance of epithelial cell polarity and barrier (By similarity).
(Microbial infection) Involved in HIV-1 virus budding. Can replace TSG101 it its role of supporting HIV-1 release; this function requires the interaction with CHMP4B. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as enveloped virus budding (HIV-1 and other lentiviruses).
Biological Process
Diagram with PDB data
PDCD6IP/CEP55Structure basis of inactivating cell abscission with chimera peptide 2
See also
Diagram with PDB data
CHMP4C/PDCD6IPALIX BRO1 CHMP4C complex